A Hybrid Parallel Classification Model for the Diagnosis of Chronic Kidney Disease.
DOI:
https://doi.org/10.9781/ijimai.2021.10.008Keywords:
Chronic Kidney, Disease Diagnosis, Clinical Dataset, Support Vector Machine, Dimensionality ReductionAbstract
Chronic Kidney Disease (CKD) has become a prevalent disease nowadays, affecting people globally around the world. Accurate prediction of CKD progression over time is essential for reducing its associated mortality and morbidity rates. This paper proposes a fast, novel hybrid approach to diagnose Chronic Renal Disease. The proposed approach is based on the optimization of SVM classifier with the hybridized dimensionality reduction approach to identify the most informative parameters for CKD diagnosis. It handles the selection of features through two steps. The first one is a filter-based approach using ReliefF method to assign weights and ranks to each feature of the dataset. The second step is the dimensionality reduction of the best-selected subset by means of PCA, a feature extraction technique. For faster execution of datasets, simultaneous execution on multiple processors is employed. The proposed model achieved the highest prediction accuracy of 92.5% on the clinical CKD dataset compared to existing methods - ‘CFS+SVM’ (60.45%), ‘ReliefF + SVM’ (86%), ‘MIFS + SVM’ (56.72%), ‘ReliefF + CFS + SVM’ (54.37). The proposed work is also examined on the benchmarked Chronic Kidney Disease Dataset and achieved classification accuracy of 98.5% compared to the accuracy with other methods -‘CFS+SVM’ (92.7%), ‘ReliefF + SVM’ (89.6%), ‘MIFS + SVM’ (94.7%). The experimental outcomes positively demonstrate that the proposed hybridized model is effective in undertaking medical data classification tasks and is, therefore, a promising tool for the diagnosis of CKD patients. The proposed approach is statistically validated with the Friedman test with significant results compared to other techniques. The proposed approach also executes in the least time with improved prediction accuracy and competes with and even outperforms other methods in the literature.
Downloads
References
C. Nordqvist, “Symptoms, causes, and treatment of chronic kidney disease,” https://www.medicalnewstoday.com/articles/172179.php Accessed 14 Jan 2019.
WebMed, “Kidney Disease,” https://www.webmd.com/a-to-z-guides/understanding-kidney-disease-basic-information Accessed 23 April 2020.
P. Kathuria, and B. Wedro, “Chronic Kidney Disease,” https://www.emedicinehealth.com/chronic_kidney_disease/article_em Accessed 23 Feb 2019.
Y. Kazemi and S. A. Mirroshandel, “A novel method for predicting kidney stone type using ensemble learning,” Artificial Intelligence in Medicine, vol. 84, pp. 117–126, Jan. 2018.
Kidney Care UK,2017, “An estimated 1 in 10 people worldwide have chronic kidney disease,” https://www.kidneycareuk.org/news-andcampaigns/news/estimated-1-10-people-worldwide-have-chronickidney-disease/ Accessed 25 March, 2020.
P. P. Varma, “Prevalence of chronic kidney disease in India - Where are we heading?,” Indian Journal of Nephrology, vol. 25, no. 3. pp. 133–135, 2015.
V.A Luyckx, M. Tonelli, J. W. Stanifer, “The global burden of kidney disease and the sustainable development goals” Bull World Health Organ, vol. 96. No. 6, pp. 414-422D, 2018. doi: 10.2471/BLT.17.206441.
CDC, “National Chronic Kidney Disease Fact Sheet, 2017,” https://www.cdc.gov/diabetes/pubs/pdf/kidney_factsheet.pdf Accessed 25 March, 2019.
NHS, “NHS Kidney Care,” https://www.england.nhs.uk/improvementhub/wp-content/uploads/sites/44/2017/11/Chronic-Kidney-Disease-inEngland-The-Human-and-Financial-Cost.pdf Accessed 25 March, 2019.
National Kidney Foundation, “Chronic Kidney Disease (CKD) Symptoms and Causes,” https://www.kidney.org/atoz/content/about-chronickidney-disease Accessed 25 March, 2019.
National Kidney Foundation, “Global Facts: About Kideny Disease,” Retrieved from https://www.kidney.org/kidneydisease/global-factsabout-kidney-disease on 12th February, 2019.
H. Polat, H. Danaei Mehr, and A. Cetin, “Diagnosis of Chronic Kidney Disease Based on Support Vector Machine by Feature Selection Methods,” Journal of Medical Systems, vol. 41, no. 4, p. 55, Apr. 2017.
P. Meesad and G. G. Yen, “Combined numerical and linguistic knowledge representation and its application to medical diagnosis,” IEEE Transactions on Systems, Man, and Cybernetics. Part A Systems Humans., vol. 33, no. 2, pp. 206–222, 2003.
E. Gürbüz and E. Kılıç, “A new adaptive support vector machine for diagnosis of diseases”. Expert Systems, vol. 31, no. 5, pp. 389-397, 2014.
M. Seera and C. P. Lim, “A hybrid intelligent system for medical data classification,” Expert Systems with Applications, vol. 41, no. 5, pp. 2239–2249, 2014.
N Liu,E.S Qi, M. Xu, M., B. Gao, B. and G.Q. Liu,” A novel intelligent classification model for breast cancer diagnosis,” Information Processing & Management, vol. 56,no. 3, pp. 609-623, 2019.
I. Mandal and N. Sairam, “Accurate prediction of coronary artery disease using reliable diagnosis system,” Journal of Medical Systems, vol. 36, no. 5, pp. 3353–3373, 2012.
D. Jain and V. Singh, “Utilization of Data Mining Classification Approach for Disease Prediction: A Survey,” International Journal of Education and Management Engineering, vol. 6, no. 6, pp. 45–52, 2016.
D. Jain and V. Singh, “Feature selection and classification systems for chronic disease prediction: A review,” Egyptian Informatics Journal, vol. 19, no. 3. pp. 179–189, 2018.
C. Cortes, and V. Vapnik, “Support vector machine,” Machine learning, vol. 20, no. 3, pp. 273-297, 1995.
H. L. Chen, B. Yang, G. Wang, J. Liu, Y.D. Chen and D. Y. Liu, “A threestage expert system based on support vector machines for thyroid disease diagnosis,” Journal of medical systems, vol. 36, no. 3 pp. 1953-1963, 2012.
M. F. Akay, “Support vector machines combined with feature selection for breast cancer diagnosis,” Expert Systems with Applications, vol. 36, no. 2 PART 2, pp. 3240–3247, 2009.
Lin, S. L. and Liu, Z, “Parameter selection in SVM with RBF kernel function,” Journal-Zhejiang University of Technology, vol. 35, no. 2, p. 163, 2007.
Y. Wang and L. Feng, “Hybrid feature selection using component cooccurrence based feature relevance measurement,” Expert Systems with Applications, vol. 102, pp. 83-99, 2018.
L. Parisi, N. RaviChandran, and M. L. Manaog, “Feature-driven machine learning to improve early diagnosis of Parkinson’s disease,” Expert Systems with Applications, vol. 110, pp. 182–190, Nov. 2018.
H. W. Park, D. Li, Y. Piao, and K. H. Ryu, “A hybrid feature selection method to classification and its application in hypertension diagnosis,” in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 10443 LNCS, pp. 11–19, 2017.
H. Lu, J. Chen, K. Yan, Q. Jin, Y. Xue and Z. Gao, “A hybrid feature selection algorithm for gene expression data classification,” Neurocomputing, vol. 256, pp. 56-62, 2017.
J. Xie, J. Lei, W. Xie, Y. Shi, and X. Liu, “Two-stage hybrid feature selection algorithms for diagnosing erythemato-squamous diseases,” Health Information Science and Systems, vol. 1, no. 1, p. 10, Dec. 2013.
S. S. Kannan and N. Ramaraj, “A novel hybrid feature selection via Symmetrical Uncertainty ranking based local memetic search algorithm,” Knowledge-Based Systems, vol. 23, no. 6, pp. 580–585, 2010.
S. Ramya, and N. Radha, “Diagnosis of Chronic Kidney Disease Using Machine Learning Algorithms,” International Journal of Innovative Research in Computer and Communication Engineering, vol. 4, no. 1 pp. 812-820, 2016.
M. Kumar, “Prediction of Chronic Kidney Disease Using Random Forest Machine Learning Algorithm,” International Journal of Computer Science and Mobile Computing, vol. 5, no. 2 pp. 24-33, 2016.
A. Dubey, “A Classification of CKD Cases Using MultiVariate K-Means Clustering,” International Journal of Scientific and Research Publications, vol. 5, no. 8 pp. 1–5, 2015.
L. J. Rubini and P. Eswaran, “Generating comparative analysis of early stage prediction of Chronic Kidney Disease,” International OPEN ACCESS Journal of Modern Engineering Research, vol. 5, no. 7 pp. 49–55, 2015.
E. M. Senan, M. H. Al-Adhaileh, F. W. Alsaade, T. H. Aldhyani, A. A. Alqarni, N. Alsharif, M. Y. Alzahrani, “Diagnosis of Chronic Kidney Disease Using Effective Classification Algorithms and Recursive Feature Elimination Techniques,” Journal of Healthcare Engineering, pp. 1-10, 2021.
S. Vijayarani, and S. Dharyanand, “Data mining classification algorithms for kidney disease prediction,” International Journal on Cybernetics & Informatics, vol. 4, no. 4 pp. 13–25, 2015.
N. A. Almansour, H. F. Syed, N. R. Khayat, R. K. Altheeb, R. E. Juri, J. Alhiyafi, and S.O. Olatunji, “Neural network and support vector machine for the prediction of chronic kidney disease: A comparative study,” Computers in biology and medicine, vol. 109, pp. 101-111, 2019.
S. K. Sahu and A. K. Shrivas, “Comparative Study of Classification Models with Genetic Search Based Feature Selection Technique,” International Journal of Applied Evolutionary Computation, vol. 9, no. 3, pp. 1-11, 2018.
S. B. Akben, “Early Stage Chronic Kidney Disease Diagnosis by Applying Data Mining Methods to Urinalysis, Blood Analysis and Disease History,” Irbm, vol. 39, no. 5, pp. 353–358, Nov. 2018.
R. Misir, M. Mitra and R.K. Samanta, “A reduced set of features for chronic kidney disease prediction,” Journal of pathology informatics, vol. 8, 2017.
J. Norouzi, A. Yadollahpour, S. A. Mirbagheri, M. M. Mazdeh and S. A. Hosseini, “Predicting renal failure progression in chronic kidney disease using integrated intelligent fuzzy expert system,” Computational and mathematical methods in medicine, 2016.
A. A. Serpen, “Diagnosis Rule Extraction from Patient Data for Chronic Kidney Disease Using Machine Learning,” International Journal of Biomedical and Clinical Engineering, vol. 5, no. 2, pp. 64–72, 2016.
T. Li and S. Fong, “A Fast Feature Selection Method Based on Coefficient of Variation for Diabetics Prediction Using Machine Learning,” International Journal of Extreme Automation and Connectivity in Healthcare, vol. 1, no. 1, pp. 55–65, 2018.
A. K. Shukla, P. Singh, and M. Vardhan, “A two-stage gene selection method for biomarker discovery from microarray data for cancer classification,” Chemometrics and Intelligent Laboratory Systems, vol. 183, pp. 47–58, Dec. 2018.
A. Mert, N. Kılıç, and A. Akan, “An improved hybrid feature reduction for increased breast cancer diagnostic performance,” Biomedical Engineering Letters, vol. 4, no. 3, pp. 285-29, 2014.
D. Salas-Gonzalez, J. M. Górriz, J. Ramírez, M. López, I. Alvarez, F. Segovia, and C. G. Puntonet, “Computer-aided diagnosis of Alzheimer’s disease using support vector machines and classification trees,” Physics in Medicine and Biology, vol. 55, no. 10, pp. 2807, 2010.
A.Y. Al-Hyari, A. M. Al-Taee, and M.A. Al-Taee, “Diagnosis and classification of chronic renal failure utilising intelligent data mining classifiers,” International Journal of Information Technology and Web Engineering (IJITWE), vol. 9, no. 4, pp. 1-12, 2014.
S.A. Mostafa, A. Mustapha, M.A. Mohammed, R.I. Hamed, N. Arunkumar, M.K.A. Ghani, and S.H. Khaleefah, “Examining multiple feature evaluation and classification methods for improving the diagnosis of Parkinson’s disease,” Cognitive Systems Research, vol. 54, pp. 90-99, 2019.
S. Shilaskar and A. Ghatol, “Feature selection for medical diagnosis: Evaluation for cardiovascular diseases,” Expert Systems with Applications, vol. 40, no. 10, pp. 4146-4153, 2013.
D. Çalişir and E. Dogantekin, “A new intelligent hepatitis diagnosis system: PCA-LSSVM,” Expert Systems with Applications, vol. 38, no. 8, pp. 10705–10708, 2011.
I. Babaoǧlu, O. Findik, and M. Bayrak, “Effects of principle component analysis on assessment of coronary artery diseases using support vector machine,” Expert Systems with Applications, vol. 37, no. 3, pp. 2182– 2185, 2010.
D. Jain and V. Singh, “An Efficient Hybrid Feature Selection model for Dimensionality Reduction,” in Procedia Computer Science, vol. 132, pp. 333–341, 2018.
Z. Pang, D. Zhu, D. Chen, L. Li, and Y. Shao, “A Computer-Aided Diagnosis System for Dynamic Contrast-Enhanced MR Images Based on Level Set Segmentation and ReliefF Feature Selection,” Computational and Mathematical Methods in Medicine, vol. 2015, pp. 1–10, 2015.
H. Uĝuz, “A hybrid system based on information gain and principal component analysis for the classification of transcranial Doppler signals,” Computer Methods and Programs in Biomedicine, vol. 107, no. 3, pp. 598–609, 2012.
H. L. Chen, D. Y. Liu, B. Yang, J. Liu, and G. Wang, “A new hybrid method based on local fisher discriminant analysis and support vector machines for hepatitis disease diagnosis,” Expert Systems with Applications, vol. 38, no. 9, pp. 11796–11803, 2011.
M. S. Uzer, O. Inan, and N. Yilmaz, “A hybrid breast cancer detection system via neural network and feature selection based on SBS, SFS and PCA,” Neural Computing & Applications, vol. 23, no. 3–4, pp. 719–728, 2013.
C. Lu, Z. Zhu, and X. Gu, “An Intelligent System for Lung Cancer Diagnosis Using a New Genetic Algorithm Based Feature Selection,” Journal of Medical Systems, vol. 38, no. 9, p. 97, Sep. 2014.
G. T. Reddy and N. Khare, “An Efficient System for Heart Disease Prediction Using Hybrid OFBAT with Rule-Based Fuzzy Logic Model,” Journal of Circuits, Systems and Computers, vol. 26, no. 04, p. 1750061, Apr. 2017.
M. S. Amin, Y. K. Chiam, and K. D. Varathan, “Identification of significant features and data mining techniques in predicting heart disease,” Telemat. Informatics, vol. 36, pp. 82–93, Mar. 2019.
Parul Sinha and Poonam Sinha, “Comparative Study of Chronic Kidney Disease Prediction using KNN and SVM,” International Journal of Engineering Research & Technology, vol. V4, no. 12, Dec. 2015.
K. Polat and S. Güneş, “Automatic determination of diseases related to lymph system from lymphography data using principles component analysis (PCA), fuzzy weighting pre-processing and ANFIS,” Expert Systems with Applications, vol. 33, no. 3, pp. 636–641, 2007.
M. Lichman, “UCI Machine Learning Repository,” http://archive.ics.uci.edu/ml Accessed 20 March 2020.
D. Jain and V. Singh, “A two-phase hybrid approach using feature selection and Adaptive SVM for chronic disease classification,” International Journal of Computers and Applications, vol. 43, no. 6, pp. 524-536, 2021.
I. Kononenko, “Estimating attributes: Analysis and extensions of RELIEF,” in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 784 LNCS, pp. 171–182, 1994.
E.H.A. Rady, and A.S. Anwar, “Prediction of kidney disease stages using data mining algorithms,” Informatics in Medicine Unlocked, 2019.
M. Friedman, “A Comparison of Alternative Tests of Significance for the Problem of m Rankings,” The Annals of Mathematical Statistics., vol. 11, no. 1, pp. 86–92, 1940.
Downloads
Published
-
Abstract179
-
PDF14